VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Thu Mar 19 2015 - 10:08:57 CDT

On Thu, Mar 19, 2015 at 8:35 AM, Kevin C Chan
<cchan2242-c_at_my.cityu.edu.hk> wrote:
>
>
> Dear Users,
>
> We can simply align two pdb files using "measure fit" and "move". I'm
> thinking how it can be applied to a trajectory. I can imagine loading the
> trajectory and doing the same thing for each single frame and ending with a
> "write dcd" but is there another way?

http://www.ks.uiuc.edu/Research/vmd/plugins/rmsdtt/

>
> Thanks in advance,
> Kevin
> City University of Hong Kong
> 

-- 
Dr. Axel Kohlmeyer  akohlmey_at_gmail.com  http://goo.gl/1wk0
College of Science & Technology, Temple University, Philadelphia PA, USA
International Centre for Theoretical Physics, Trieste. Italy.