VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Feb 28 2011 - 10:57:03 CST
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Hi,
We haven't changed anything in regards to the use of Surf in VMD, so
I am puzzled why you are finding that the behavior has changed since
VMD 1.8.7. We didn't develop Surf, and the code hasn't been modified
in years. Have you tried using MSMS rather than Surf? MSMS tends to
be more robust, but you'll have to download and install MSMS from the
Scripps web site.
Cheers,
John Stone
vmd_at_ks.uiuc.edu
On Mon, Feb 28, 2011 at 11:52:08AM -0500, chris.neale_at_utoronto.ca wrote:
> Using VMD Version 1.9 beta 1 (2011-02-15) Platforms
>
> When I select a surf representation for TIP4P water, it fails with
> "negative circle radius...". If I run surf on a selection "water and
> not type MW" it works just fine. This was not previously a problem in
> VMD 1.8.7
>
> Just posting the issue.
>
> Thanks,
> Chris.
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
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