VMD-L Mailing List

From: ZEINAB EMAMI (zemami_at_ku.edu.tr)
Date: Thu Jul 24 2014 - 06:42:49 CDT

Dear All,

I am trying to run my MD simulation for a peptid with NAMD. My error file
is empty but something is wrong with the running:

1. the output CDC file is too small (770 KB) while I have chosen the run
time as 100 ns.
2. Also, the energy is constant, while I am using a NVT system and expect
the energy value to fluctuate.

Thank you in advance!
Zeinab