VMD-L Mailing List

From: Francesco Pietra (chiendarret_at_gmail.com)
Date: Mon Aug 26 2013 - 01:47:33 CDT

Hello;
I am looking for a VMD plugin/script to match (superimpose) a portion (such
as a few alpha-helix turns) of a large polypeptide model 1 with a small
polypeptide model 2. All that in order to replace the model-2 part in model
1.

This means that model 2 was modeled separately while maintaining by
rmsd-colvars the conformation of the helical portion that I would like to
superimpose.

Thanks

francesco pietra