VMD-L Mailing List

From: Christina Payne (christina.payne_at_Vanderbilt.Edu)
Date: Wed Apr 06 2005 - 11:05:39 CDT

I am trying to use the solvate plugin in VMD to add water to a very
large system. I have successfully been able to solvate it as planned;
however, in printing the pdb file with the water atoms tacked on the
end, VMD prints ***** after 99999 atoms. Oddly enough, the
corresponding psf file correctly numbers the atoms over 100000. Is
there an option in solvate that would help me get around this, or do you
think I will have to renumber them by writing my own program?

Thanks,
Christina Payne