VMD-L Mailing List

From: Deepak Singh (desingh_at_syr.edu)
Date: Tue Oct 17 2000 - 11:51:33 CDT

Works like a charm. Thank you.

Deepak.

John Stone wrote:

> Hi,
> You can use "same residue as" along with the rest of that selection
> to get the whole residues rather than just part of them.
>
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Tue, Oct 17, 2000 at 12:31:12PM -0400, Deepak Singh wrote:
> > oops my fault,
> >
> > When I tried that earlier that, I got a bunch of PHE's and what appeared
> > to be other residues (I am doing this grayscale), but what looked like a
> > gly,s and Leu's are actually fragments from PHE. Is there anyway I can
> > get the complete PHE residue displayed? I am getting parts of some
> > residues, but not the entire residue (this has always been a problem with
> > the "within" keyword)
> >
> > Thanks
> >
> > Deepak.
> >
> > Sergei Izrailev wrote:
> >
> > > Hello,
> > >
> > > resname PHE and (within 5 of resid 105)
> > >
> > > should do it.
> > >
> > > Sincerely,
> > >
> > > Sergei
> > >
> > > Deepak Singh wrote:
> > > > I want to
> > > > select all phenylalanines with 5 Angstroms of resid 205 and no other
> > > > residues in that range.
> >
> > --
> > **********************************************************************
> > Deepak Singh Tel : (315)443 1739 (w)
> > Graduate Student (315)472 9659 (h)
> > Dept. of Chemistry Fax : (315)443 4070
> > Syracuse University email : desingh_at_syr.edu
> > 1-014 CST, Syracuse URL : http://web.syr.edu/~desingh
> > NY 13244
> >
> > "Violence is the last refuge of the incompetent." --- Salvor Hardin
> > **********************************************************************
> >
> >
> >
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078 

--
**********************************************************************
Deepak Singh                        Tel : (315)443 1739 (w)
Graduate Student                          (315)472 9659 (h)
Dept. of Chemistry                  Fax : (315)443 4070
Syracuse University               email : desingh_at_syr.edu
1-014 CST, Syracuse                 URL : http://web.syr.edu/~desingh
NY 13244
"Violence is the last refuge of the incompetent." --- Salvor Hardin
**********************************************************************