From: Bennion, Brian (bennion1_at_llnl.gov)
Date: Wed Jun 15 2016 - 18:11:37 CDT

Did you recently update xorg? My version is 1.18.3 so I don't know at which version things broke. I do know that upgrading Fedora core 21 to 23 is when things broke.

________________________________
From: Eric Smoll [ericsmoll_at_gmail.com]
Sent: Wednesday, June 15, 2016 3:17 PM
To: Bennion, Brian
Subject: Re: vmd-l:

Hi Brian,

Thanks for the response. Here is my X11 version info.

[ ~ ] $ xdpyinfo | grep "version"
version number: 11.0
X.Org version: 1.17.1

Best,
Eric

On Wed, Jun 15, 2016 at 3:40 PM, Bennion, Brian <bennion1_at_llnl.gov<redir.aspx?REF=TLA73w6zcALsEA1N68iqyjv34eiNex_QCxLcPby1Si2KMKUdcpXTCAFtYWlsdG86YmVubmlvbjFAbGxubC5nb3Y.>> wrote:
which version of X11 are you using? The latest builds of xorg completely break indirectGLX which is what you are reporting. We at LLNL have been working on this bug for several months now and don't have a resolution. Our workaround is to use mesa3d to do the rendering in software and it stinks...

Brian

________________________________
From: owner-vmd-l_at_ks.uiuc.edu<redir.aspx?REF=bcrJ7gkm2ec39PvSL15KoLoJGt-RM8PneAEtfH4ytnyKMKUdcpXTCAFtYWlsdG86b3duZXItdm1kLWxAa3MudWl1Yy5lZHU.> [owner-vmd-l_at_ks.uiuc.edu<redir.aspx?REF=bcrJ7gkm2ec39PvSL15KoLoJGt-RM8PneAEtfH4ytnyKMKUdcpXTCAFtYWlsdG86b3duZXItdm1kLWxAa3MudWl1Yy5lZHU.>] on behalf of Eric Smoll [ericsmoll_at_gmail.com<redir.aspx?REF=rP5sSaXk6LfOs7UK4Hjb9AVXZJTO6fkvjwoUVfrqzgmKMKUdcpXTCAFtYWlsdG86ZXJpY3Ntb2xsQGdtYWlsLmNvbQ..>]
Sent: Wednesday, June 15, 2016 1:41 PM
To: vmd-l
Subject: vmd-l:

Hello VMD users,

I am trying to install vmd 1.9.2 from the "LINUX_64 OpenGL, CUDA, TachyonL-OptiX<redir.aspx?REF=hMISj60CIPAV5Wq6Z2D4O60_M9n8zmqw9w9E-4MNAUWKMKUdcpXTCAFodHRwOi8vcmVkaXIuYXNweD9SRUY9aXlGX1NManNmb01KaTMtVjl5LWtvTmtUb1h1UW1vTmJjX1lRa05NLTlXOFdnS2hmWlpYVENBRm9kSFJ3T2k4dmQzZDNMbXR6TG5WcGRXTXVaV1IxTDBSbGRtVnNiM0J0Wlc1MEwwUnZkMjVzYjJGa0wyUnZkMjVzYjJGa0xtTm5hVDlWYzJWeVNVUTlKa0ZqWTJWemMwTnZaR1U5SmtGeVkyaHBkbVZKUkQweE16TTU.>" platform download.

After editing and running the configure script with:

./configure LINUXAMD64 OPENGL OPENGLPBUFFER FLTK TK ACTC CUDA IMD LIBSBALL XINERAMA XINPUT LIBOPTIX LIBTACHYON VRPN NETCDF COLVARS TCL PYTHON PTHREADS ICC

vmd reports the following error:

Info) VMD for LINUXAMD64, version 1.9.2 (December 29, 2014)
Info) http://www.ks.uiuc.edu/Research/vmd/5vTDNadFpDOC4.>
Info) Email questions and bug reports to
vmd_at_ks.uiuc.edu<redir.aspx?REF=5fCh04VTA6X9B-eiCycK2I-kplD5Wz6lmOs0faTVyImKMKUdcpXTCAFodHRwOi8vcmVkaXIuYXNweD9SRUY9ZGJCaHVhMm9rNkhxQmlzQ0M5WU1jaTBlbTI5blpOY2hpMkNjZUlra0pGMTQ0YXBmWlpYVENBRnRZV2xzZEc4NmRtMWtRR3R6TG5WcGRXTXVaV1Ix>
Info) Please include this reference in published work using VMD:
Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
Info) -------------------------------------------------------------
Info) Multithreading available, 8 CPUs detected.
Info) Free system memory: 30001MB (93%)
Warning) Detected a mismatch between CUDA runtime and GPU driver
Warning) Check to make sure that GPU drivers are up to date.
Info) No CUDA accelerator devices available.
Warning) Detected X11 'Composite' extension: if incorrect display occurs
Warning) try disabling this X server option. Most OpenGL drivers
Warning) disable stereoscopic display when 'Composite' is enabled.
XRequest.154: BadValue (integer parameter out of range for operation) 0x0
ERROR) Could not create OpenGL rendering context-> Exiting...
Info) VMD for LINUXAMD64, version 1.9.2 (December 29, 2014)
Info) Unable to create OpenGL window.

Note that "cat /proc/driver/nvidia/version" returns

NVRM version: NVIDIA UNIX x86_64 Kernel Module 352.30 Tue Jul 21 18:53:45 PDT 2015
GCC version: gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1)

Any guidance is much appreciated.

Best,
Eric