VMD-L Mailing List

From: nur avneet (nuravneet_at_yahoo.co.in)
Date: Fri May 04 2007 - 06:33:55 CDT

Dear all
 Please guide me how can we align a protein normal to the lipid bilayer and then merge the two to tart a simulation with gromacs.
 I have followed EMBO course, 2004 available online...it works well when i align the protein parallel to the bilayer but when i align the protein normal to the bilayer it fails.
 
 Can anyone guide me through..
 
 regards
 nur
 
       
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