VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_cmm.chem.upenn.edu)
Date: Fri May 04 2007 - 08:53:30 CDT

On Fri, 4 May 2007, nur avneet wrote:

NA> Dear all

NA> Please guide me how can we align a protein normal to the lipid
NA> bilayer and then merge the two to tart a simulation with gromacs.
NA> I have followed EMBO course, 2004 available online...it works well
NA> when i align the protein parallel to the bilayer but when i align
NA> the protein normal to the bilayer it fails.

dear nur,

NA> Can anyone guide me through..

not without _you_ telling us first what you are doing
exactly and where and how it fails. you have to help
us to help you. see e.g.:
http://www.catb.org/~esr/faqs/smart-questions.html

thanks,
   axel.

NA>
NA> regards
NA> nur
NA>
NA>
NA> ---------------------------------
NA> Check out what you're missing if you're not on Yahoo! Messenger 

-- 
=======================================================================
Axel Kohlmeyer   akohlmey_at_cmm.chem.upenn.edu   http://www.cmm.upenn.edu
   Center for Molecular Modeling   --   University of Pennsylvania
Department of Chemistry, 231 S.34th Street, Philadelphia, PA 19104-6323
tel: 1-215-898-1582,  fax: 1-215-573-6233,  office-tel: 1-215-898-5425
=======================================================================
If you make something idiot-proof, the universe creates a better idiot.