From: Lubos Vrbka (shnek_at_tiscali.cz)
Date: Tue Dec 07 2004 - 02:23:05 CST

hi everybody,

thanks a lot for your help with the distribution analysis "script". it
works perfectly. however, i still have one question. if i use selection
        ... within 6 of protein
in a trajectory frame with periodic boundary conditions, are PBC
correctly applied, i.e. are all particles in larger distance than 1/2 of
the corresponding axis "translated" to their imaged positions in the
unit cell? my trajectory is imaged with protein shifted to the center of
the unit cell, but i would also like to do distribution analysis around
other solutes that are not centered in the cell...

thanks in advance,
lubos

-- 
Lubos
_@_"