VMD-L Mailing List

From: Vijaya Brahma (vbrahma_at_imtech.res.in)
Date: Wed Jul 25 2007 - 23:56:13 CDT

Dear ALL

I have solvated my protein in a water box giving the PDB and PSF input
with the boundary of 2.8 and the box size using the molecules' dimension
itself.

I am having this unique problem, I need a water box size such that it is
only and strictly 8 Ang. away from any side of the molecule. Is it
possible in VMD. Please let me know the script for the same.

Thanks and Regards, 

-- 
....................................................................
VIJAYA BRAHMA
...................................................................
Research Scholar
Protein Science & Engineering
Institute of Microbial Technology(IMTECH)
Chandigarh
India
http://www.imtech.res.in/bic/phd.html