VMD-L Mailing List

From: Archana Sonawani-Jagtap (ask.archana_at_gmail.com)
Date: Thu Nov 24 2016 - 01:12:42 CST

Hi,

I tried ./configure LINUXAMD64, but still I get the following after make
install:

if [ ! -d "/usr/local/lib/vmd" ]; then \
    mkdir -p "/usr/local/lib/vmd" ; \
fi ; \
if [ ! -d "/usr/local/bin" ]; then \
    mkdir -p "/usr/local/bin" ; \
fi ; \
if [ ! -d "/usr/local/lib/vmd"/doc ]; then \
    mkdir -p "/usr/local/lib/vmd"/doc; \
fi
cp ../Announcement "/usr/local/lib/vmd"
cp ../README "/usr/local/lib/vmd"
cp ../LICENSE "/usr/local/lib/vmd"
cp ../doc/ug.pdf "/usr/local/lib/vmd"/doc
if [ -f /usr/local/lib/vmd/vmd_LINUXAMD64 ]; then \
           mv -f "/usr/local/lib/vmd/vmd_LINUXAMD64"
"/usr/local/lib/vmd/OLD_vmd_LINUXAMD64" ; rm -f
"/usr/local/lib/vmd/OLD_vmd_LINUXAMD64" ; fi
cp ../LINUXAMD64/vmd_LINUXAMD64 "/usr/local/lib/vmd"
cp: cannot stat ‘../LINUXAMD64/vmd_LINUXAMD64’: No such file or directory
make: [install] Error 1 (ignored)
if [ -d "../lib/redistrib/lib_LINUXAMD64" ]; then \
    cd ../lib/redistrib/lib_LINUXAMD64; tar -cf - ./* | \
    (cd "/usr/local/lib/vmd" ; tar -xf -) \
fi ;
cp ../lib/stride/stride_LINUXAMD64 ../lib/surf/surf_LINUXAMD64
./lib/tachyon/tachyon_LINUXAMD64 "/usr/local/lib/vmd"
cp: cannot stat ‘../lib/stride/stride_LINUXAMD64’: No such file or directory
cp: cannot stat ‘../lib/surf/surf_LINUXAMD64’: No such file or directory
cp: cannot stat ‘../lib/tachyon/tachyon_LINUXAMD64’: No such file or
directory
make: [install] Error 1 (ignored)
cd ..; tar -cf - scripts | \
(cd "/usr/local/lib/vmd" ; tar -xf -)
cd ../lib; tar -cf - scripts | \
(cd "/usr/local/lib/vmd" ; tar -xf -)
cd ..; tar -cf - python | \
(cd "/usr/local/lib/vmd"/scripts ; tar -xf -)
cd ..; tar -cf - plugins | \
(cd "/usr/local/lib/vmd" ; tar -xf -)
cd ..; tar -cf - shaders | \
(cd "/usr/local/lib/vmd" ; tar -xf -)
if [ -f ../LINUXAMD64/OptiXShaders.ptx ]; then \
    cp ../LINUXAMD64/OptiXShaders.ptx "/usr/local/lib/vmd/shaders"; \
fi;
cp ../data/.vmdrc ../data/.vmdsensors ../data/vmd_completion.dat
"/usr/local/lib/vmd"
cd ../bin ; \
if [ -f run_vmd_tmp ]; then rm -f run_vmd_tmp; fi ; \
if [ ! -x "/bin/csh" ]; then \
    echo "Info: /bin/csh shell not found, installing Bourne shell startup
script instead" ; \
    echo '#!/bin/sh' >> run_vmd_tmp ; \
    echo 'defaultvmddir="/usr/local/lib/vmd"' >> run_vmd_tmp ; \
    echo 'vmdbasename=vmd' >> run_vmd_tmp ; \
    cat vmd.sh >> run_vmd_tmp ; \
else \
    echo '#!/bin/csh' >> run_vmd_tmp ; \
    echo 'set defaultvmddir="/usr/local/lib/vmd"' >> run_vmd_tmp ; \
    echo 'set vmdbasename=vmd' >> run_vmd_tmp ; \
    cat vmd.csh >> run_vmd_tmp ; \
fi ; \
chmod +x run_vmd_tmp ; \
cp run_vmd_tmp "/usr/local/bin"/vmd ; \
rm -f run_vmd_tmp
echo Make sure "/usr/local/bin"/vmd is in your path.
Make sure /usr/local/bin/vmd is in your path.
echo "VMD installation complete. Enjoy!"
VMD installation complete. Enjoy!
[root_at_localhost src]# vmd
/usr/local/lib/vmd/vmd_LINUX: Command not found.

Regards,

Archana

On Wed, Nov 23, 2016 at 1:14 PM, John Stone <johns_at_ks.uiuc.edu> wrote:

> Hi,
> Does your CentOS 7 machine have 32-bit runtime libraries on it? If not,
> you will have to install a 64-bit build instead of a 32-bit build.
> That could cause the error you're seeing. You can double-check whether
> that's a likely scenario by checking that /usr/local/lib/vmd/vmd_LINUX
> does indeed exist. If it does, then most likely your machine lacks 32-bit
> libraries and you'd need to install one of the 64-bit builds instead
> (LINUXAMD64).
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Wed, Nov 23, 2016 at 01:04:45PM +0530, Archana Sonawani-Jagtap wrote:
> > Hi all,
> > I am trying toA installA vmd-1.9.2 on Centos7 platform. I have
> downloaded
> > theA vmd-1.9.2.bin.LINUX.opengl.tar.gz file.
> > I want to install it in /usr/local, so I followed the following steps:
> >
> > 1) I untar it in /usr/local.
> > 2) cd vmd-1.9.2A
> > 3) ./configure
> > 4) cd src
> > 5) make install
> >
> > I get following message:
> > Make sure /usr/local/bin/vmd is in your path.
> > VMD installation complete.A Enjoy!
> > And when I run vmd from /usr/local/bin, I get following error:
> > /usr/local/lib/vmd/vmd_LINUX: Command not found
> >
> > Please help me out
> > Regards,
> > Archana Sonawani-Jagtap
> > S9960791339
>
> --
> NIH Center for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/
> 

-- 
Archana Sonawani-Jagtap
Senior Research Fellow,
Biomedical Informatics Centre,
NIRRH (ICMR), Parel
Mumbai, India.
9960791339