VMD-L Mailing List

From: Katherine Parra (kparra_at_mail.usf.edu)
Date: Mon Sep 28 2009 - 12:53:21 CDT

Dear VMD users:
I'm trying to get H bonds between my protein and the solvent during a
trajectory. What I;m getting so far is a number of bonds.
Is there any way to identify these H bonds between the two specified
sections of the protein during the trajectory?
What I mean by identify is to get a list of the residues involved.
Thanks.
Katherine.