VMD-L Mailing List

From: Elias Ahadi (eahadi_at_uwo.ca)
Date: Mon Sep 28 2009 - 13:38:32 CDT

Hello,

I have written my own MD program. I am simulating a model protein chain in a water cluster. For visualization, I use VMD v1.8.4 to read/display the outputted results (coordinates) in either PDB or XYZ format. The problem is that VMD does not read the CONECT command in PDB to properly display the chain links. Is there any options within VMD or another visualization program that can display this feature?

Really appreciate if anyone can help.

Elias