VMD-L Mailing List
From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Mon Apr 23 2012 - 18:10:58 CDT
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On Mon, Apr 23, 2012 at 6:21 PM, "Łukasz Piękoś"
<piekos_at_chemia.uj.edu.pl> wrote:
> Dear VMD users,
>
> As far as I know VMD does not include H-H bonds in DynamicBonds drawing
> method.
> Is there any possibility to circumvent this situation?
> I have MD trajectory, which includes numerous transitions involving H-H
> bonds forming and breaking. In this situation adding and removing H-H
> bonds manually does not solve my problem.
just change name/type/element, reset colors and radii and then
do a "mol reanalyze top"
that should make VMD forget that those were hydrogen atoms.
axel.
>
> Best regards
> Lukasz Piekos
>
-- Dr. Axel Kohlmeyer akohlmey_at_gmail.com http://goo.gl/1wk0 College of Science and Technology Temple University, Philadelphia PA, USA.
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