From: Chirag Vora (
Date: Tue Nov 22 2011 - 12:01:52 CST

Dear all,
I want to plot Radial Distribution function as a function of time (or
frames) from all the trajectories.
I ran simulation on Desmond. Loaded my trajectories on VMD successfully.

Secondly, I am dealing with a synthetic polymer and it's complex with a
small molecule.
I know this ligand binds with a specific residue.

Please suggest other properties I can analyse using VMD that will imply
specificity of liigand for this residue?


Chirag V. Vora <>
Department of Pharmacoinformatics<>
Block - A, Bioinformatics Infrastructure Facility,
National Institute of Pharmaceutical Education and
Sector 67, S.A.S. Nagar,
Punjab (INDIA) - 160 062,
Phone: +91-9814187740