VMD-L Mailing List

From: sajad falsafi (sajad.falsafi_at_yahoo.com)
Date: Wed Nov 09 2011 - 02:53:43 CST

Hi,

you can ask your question in Ubuntu Forum.

Best of luck,
Sajad Falsafi
Dept. of Genetics, Shahid Chamran University of Ahvaz
Toxicology Research Center, Jondi-Shapour University of Medical Sciences

--- On Wed, 11/9/11, Frank Barry <frank.james.barry_at_gmail.com> wrote:

> From: Frank Barry <frank.james.barry_at_gmail.com>
> Subject: Re: vmd-l: rlwrap problem on
> To: "Gianluca Interlandi" <gianluca_at_u.washington.edu>
> Cc: vmd-l_at_ks.uiuc.edu
> Date: Wednesday, November 9, 2011, 12:04 AM
> Any other ideas guys?
> Thanks,
> Frank
>
> On Tue, Nov 1, 2011 at 3:15 PM, Gianluca Interlandi
> <gianluca_at_u.washington.edu>
> wrote:
> > Ooops, sorry, I see that you already have it istalled.
> Then it doesn't help
> > ;)
> >
> > G
> >
> > On Tue, 1 Nov 2011, Gianluca Interlandi wrote:
> >
> >> Go to the software installer, search for rlwrap
> and install it:
> >>
> >> https://help.ubuntu.com/community/InstallingSoftware
> >>
> >> As simple as linux can be.
> >>
> >> Gianluca
> >>
> >> On Tue, 1 Nov 2011, Frank Barry wrote:
> >>
> >>> I am having problems running vmd 1.9 on
> a newly installed Ubuntu box.
> >>>
> >>> $ vmd
> >>> rlwrap: No match.
> >>>
> >>> I found this related posts on the list:
> >>>   http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/18099.html
> >>>
> >>> As in the post, if I comment out the "rlwrap
> block" in
> >>> the start-up script I can get
> >>> vmd to open but with quite poor performance
> (maybe unrelated).
> >>> I am quite new to Linux (especially
> Ubuntu). So any tips on a better way
> >>> to proceed would be helpful. Thanks in
> advance,
> >>> Frank
> >>>
> >>>
> >>> ##
> using vmd-1.9.bin.LINUXAMD64.opengl.tar.gz
> >>>
> >>> $ which csh rlwrap
> >>> /bin/csh
> >>> /usr/bin/rlwrap
> >>>
> >>>
> >>> $ ./configure
> >>> using configure.options: LINUXAMD64 OPENGL
> FLTK TK ACTC CUDA IMD LIBSBALL
> >>> XINERAMA
> >>> XINPUT LIBTACHYON VRPN NETCDF TCL PYTHON
> PTHREADS NUMPY SILENT
> >>>
> >>> $ cd src/
> >>>
> >>> $ sudo make install
> >>> Make sure /usr/local/bin/vmd is in your path.
> >>> VMD installation complete.  Enjoy!
> >>>
> >>> $ vmd
> >>> rlwrap: No match.
> >>>
> >>>
> >>> $ head /usr/local/bin/vmd
> >>> #!/bin/csh
> >>> set defaultvmddir="/usr/local/lib/vmd"
> >>>
> >>>
> >>> $ uname -a
> >>> Linux perutz 3.0.0-12-generic #20-Ubuntu SMP
> Fri Oct 7 14:56:25 UTC 2011
> >>> x86_64
> >>> x86_64 x86_64 GNU/Linux
> >>>
> >>>
> >>> $ lsb_release -a
> >>> No LSB modules are available.
> >>> Distributor ID: Ubuntu
> >>> Description: Ubuntu 11.10
> >>> Release: 11.10
> >>> Codename: oneiric
> >>>
> >>>
> >>>
> >>
> >>
> -----------------------------------------------------
> >> Gianluca Interlandi, PhD gianluca_at_u.washington.edu
> >>                   +1 (206) 685 4435
> >>                   http://artemide.bioeng.washington.edu/
> >>
> >> Postdoc at the Department of Bioengineering
> >> at the University of Washington, Seattle WA
> U.S.A.
> >>
> -----------------------------------------------------
> >
> > -----------------------------------------------------
> > Gianluca Interlandi, PhD gianluca_at_u.washington.edu
> >                    +1 (206) 685 4435
> >                    http://artemide.bioeng.washington.edu/
> >
> > Postdoc at the Department of Bioengineering
> > at the University of Washington, Seattle WA U.S.A.
> > -----------------------------------------------------
>
>