VMD-L Mailing List

From: Research Jubilant (research.jubilant_at_gmail.com)
Date: Fri Sep 13 2013 - 12:38:17 CDT

Hello all VMD users,

I'm using VMD's hydrogen bond capability from the Graphical Representations
tool. I get the Hbonds displayed in different colors (mainly blue, red and
light green, which is the VMD's default color when any molecule is loaded)
when I colored them by default 'Name'. I checked the previous discussions
about it in the forum and also in userguide but no helpful information.

Does anyone clarify the meaning of the colors shown in VMD for Hbonds?

Thanks

J