From: Ran Friedman (ran_at_hemi.tau.ac.il)
Date: Thu Jun 03 2004 - 14:56:23 CDT

Hi,

Will it work also for non-cubic boxes?

Ran.

Axel Kohlmeyer wrote:

>On Thu, 3 Jun 2004, Raghunadha Reddy Burri wrote:
>
>RB> Dear all,
>RB>
>RB> How can I possible to see CUBIC box of system in VMD, this system from gromacs
>RB> 3.2 output file (.gro).
>
>please have a look at
>http://www.theochem.ruhr-uni-bochum.de/~axel.kohlmeyer/cpmd-vmd/part2.html#chap4_sect6
>
>note, that gromacs uses nanometers, but the script expects angstroms.
>
>RB>
>RB> And also I have interest to see H-bonds between two proteins in that system.
>RB> Please help me in VMD.
>
>just add a hydrogen bonds representation to your system
>and change the selection to 'protein'. have a look into
>the VMD manual for a more detailed description of how to
>do this.
>
>hope this helps,
> axel kohlmeyer.
>
>RB>
>RB> Thank you very much for your time
>RB>
>RB> Till Then
>RB>
>RB> Burri
>RB>
>RB>
>
>
>