VMD-L Mailing List

From: Eduard Schreiner (eduard.schreiner_at_gmail.com)
Date: Mon Oct 04 2010 - 15:53:17 CDT

well, you are trying to find hbonds within the selection "index 5",
i.e. within a selection containing one atom ("Find all hydrogen bonds
in the given selection(s),"). Please check the manual on the meaning
of the selections provided to the measure hbonds command.

eddi

On Mon, Oct 4, 2010 at 3:01 PM, Charlotte Siska <charbott_at_gmail.com> wrote:
> Whenever I try to use measure hbonds I get nothing but three empty
> lists. I have made sure that the index I use for my selection does not
> have hydrogen atoms, which was recommended in other postings in the
> mailing list. I think I am missing something.
>
> General code:
>
> measure hbonds 3.5 30 [atomselect top "index 5"]
>
> Any help would be greatly appreciated!
>
> Charlotte Siska
> 

-- 
--
=============================================================================
Eduard Schreiner
Theoretical and Computational Biophysics Group
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801
Phone: 217-244-4361
Fax: 217-244-6078
http://www.ks.uiuc.edu/~eschrein/
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