From: Yarrow Madrona (
Date: Thu Mar 28 2013 - 16:37:45 CDT


I have a bunch of dcds for an MD simulation and I would like to strip the
waters and protein (leaving only ligands) from each one. Is there a quick
way to do this all at once in the command line so I don't have to do every
one by hand in the GUI?

Thank you!

Yarrow Madrona
Graduate Student
Molecular Biology and Biochemistry Dept.
University of California, Irvine
Natural Sciences I, Rm 2403
Irvine, CA 92697