VMD-L Mailing List

From: Ricardo Oliveira dos Santos Soares (rsoares_at_fcfrp.usp.br)
Date: Tue May 24 2011 - 13:39:56 CDT

Hello Mr. Stone,

I believe it ran, because apbs works fine with PyMol. How can I run apbs in
the linux console, so I can make sure it is working properly?

Thanks for your help.

Ricardo.

On Mon, 23 May 2011 15:12:51 -0500, John Stone wrote
> Hi,
> Did APBS actually run? Usually when this happens it is because
> the apbs binary didn't run successfully. Have you run APBS by hand
> at least once to verify that it works?
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Mon, May 23, 2011 at 05:55:00PM -0200, Ricardo Oliveira dos
> Santos Soares wrote:
> > Dear users,
> >
> > I'm using VMD 1.9 and there's an issue when using APBS plugin. The console
> > states:
> >
> > Cannot access output file /usr/tmp/apbs.79178/pot.dx
> >
> > But in that directory, there's a file called pot-PE0.dx
> >
> > Has anyone had this problem before?
> >
> > Thanks in advance.
> >
> > Ricardo.
> >
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078 

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