VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Aug 16 2004 - 14:12:02 CDT
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Hi Shirley,
The existing released versions of VMD don't provide a built-in feature
for calculating solvent accessible surface area, but VMD 1.8.3 includes
a new "measure sasa" command for this purpose. If you want a test version
to try, I can provide one for you which has this feature.
John Stone
vmd_at_ks.uiuc.edu
On Fri, Aug 13, 2004 at 03:14:33PM -0700, Shirley Li wrote:
> Hello,
>
> Could anyone tell me how to calculate the ACCESSIBLE SURFACE AREA of a protein with VMD?
>
> Thank you and sorry for bothering all.
>
> Best regards,
>
> Shirley
>
>
> ---------------------------------
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-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
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