VMD-L Mailing List
From: Jorgen Simonsen (jorgen589_at_gmail.com)
Date: Tue May 17 2011 - 04:17:33 CDT
- Next message: Axel Kohlmeyer: "Re: convert prmtop to psf"
- Previous message: Esam Tolba: "Re: error in movie generator"
- Next in thread: Axel Kohlmeyer: "Re: convert prmtop to psf"
- Reply: Axel Kohlmeyer: "Re: convert prmtop to psf"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Hi all
I have an earlier thread but I seem to get the same problems as
described earlier but the solution does not seem to work or I have
understand it correctly.
I load my new.prmtop into vmd
vmd -dispdev text new.prmtop
which is fine but it is not able to read bond or angle information
Info) Atoms: 14321
Info) Bonds: 14324
Info) Angles: 0 Dihedrals: 0 Impropers: 0 Cross-terms: 0
Info) Bondtypes: 0 Angletypes: 0 Dihedraltypes: 0 Impropertypes: 0
Info) Residues: 4745
Info) Waters: 4738
Then I try different approaches
mol new test.prmtop waitfor all
animate dup 0
set sel [atomselect top all]
$sel writepsf myfile.psf
atomsel: frame -1 out of range for molecule 1
How to resolve this thanks in advance
- Next message: Axel Kohlmeyer: "Re: convert prmtop to psf"
- Previous message: Esam Tolba: "Re: error in movie generator"
- Next in thread: Axel Kohlmeyer: "Re: convert prmtop to psf"
- Reply: Axel Kohlmeyer: "Re: convert prmtop to psf"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]