VMD-L Mailing List

From: _at_huji.ac.il
Date: Tue Jan 23 2007 - 09:41:49 CST

I want all the frames to be appended to the same pdb file separated by
lets say "ENDMDL"
Thanks

-------- Original Message --------
Subject: pdb from trajectory
Date: Tue, 23 Jan 2007 17:16:29 +0200
From: politr_at_huji.ac.il
Organization: Fritz Haber Research Center
To: vmd-l_at_ks.uiuc.edu

Dear VMD users and developers,
I have a trajectory of protein in a water box. I have loaded this
trajectory in a VMD and I'm interested to create pdb file of my protein
from every frame of the trajectory. What I mean is, to create tcl script
that will save only my protein from every frame in a pdb format. Can
someone help me with this issue? Any help is more than appreciated.
Thank you very much
Regina