VMD-L Mailing List

From: Peter Freddolino (petefred_at_umich.edu)
Date: Fri Dec 18 2020 - 11:36:08 CST

I can just add -- SBCG is a completely different paradigm from the way
MARTINI works, so the question is not really applicable. Please see the
SBCG paper for how this method works. RBCG can be used with current MARTINI
versions or any MARTINI-like model by making different .cgc files.
Best,
Peter

On Fri, Dec 18, 2020 at 12:29 PM John Stone <johns_at_ks.uiuc.edu> wrote:

> I believe that both the residue- and shape-based coarse graining tools
> were developed when only the the earliest version of MARTINI had existed.
> Whatever capabilities they may have with regard to MARTINI specifically
> are likely now out of date. Those two tools have not been revised in
> many years. They were developed and contributed by students and have
> been "as-is" since then.
>
> Best regards,
> John Stone
>
> On Sat, Dec 12, 2020 at 06:29:43PM +0000, Raman Preet Singh wrote:
> > Dear All,
> > I am using MARTINI CG for membrane simulations. RBCG can build MARTINI
> > compatible CG models. Does SBCG also build MARTINI compatible CG
> models?
> > If not, is there a way to get MARTINI compatible CG models from SBCG?
> > Regards,
> > Raman
>
> --
> NIH Center for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/
>
>