VMD-L Mailing List
From: George Tzotzos (gtzotzos_at_me.com)
Date: Fri May 20 2011 - 08:31:17 CDT
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Hi everybody,
I'm new to VMD and would be grateful for any help you may provide.
I've loaded and amber topology and trajectory file. The trajectory relates to a ligand bound on a protein of 137 residues.
I can select the ligand from Selected Atomos with (resid 138) drawing method CPK
I'm trying to visualise both the protein and the ligand. When I use (resid 138) and (protein) both molecules disappear from the display.
Likewise when I try to select (resid X) and (resid 138) the effect is the same.
I followed the basic tutorial but to no avail.
Your advice will be greatly appreciated.
Best regards
George
- Next message: Nicola Giacche': "pbc unwrap not complete"
- Previous message: ban arn: "Re: Aligning two proteins of varying atom numbers"
- Next in thread: Axel Kohlmeyer: "Re: Displaying protein AND ligand from an amber trajectory"
- Reply: Axel Kohlmeyer: "Re: Displaying protein AND ligand from an amber trajectory"
- Reply: Ajasja Ljubetič: "Re: Displaying protein AND ligand from an amber trajectory"
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