VMD-L Mailing List

From: Neelanjana Sengupta (senguptan_at_gmail.com)
Date: Wed Jun 03 2015 - 10:14:16 CDT

Dear VMD experts,

I have a peptide structure, which is
"linker1-strand1-linker2-strand2-linker3" , where the strands are amino
acid sequences of specific secondary structure (beta sheet actually), and
the linkers are sequences that are coil-like.

I wish to create constructs like
"linker1-strand1-linker2-strand2-linker2-strand3-linker3", etc. Is there a
straightforward way to do this (versus the tedious way, where I chop
everything, and get the end atoms close enough to form bonds)?

Thanks,
Neelanjana