VMD-L Mailing List

From: Hurt, Darrell (NIH/NIAID) [E] (darrellh_at_niaid.nih.gov)
Date: Mon Feb 07 2011 - 06:54:08 CST

Hi Balaji,

I've been using the TRAJELIX package of SIMULAID. It is kind of cumbersome
to use and script, but it works well and gives lots of good output.

http://inka.mssm.edu/~mezei/simulaid/

Cheers,
Darrell

On 2/7/11 6:29 AM, "ban arn" <ban.arn_at_gmail.com> wrote:

> Dear VMD Users
>
> Is there any script available in VMD for calculation of helical motion
> along the simulation time.
>
> Also, I would like to map the helical moment of each helix & represent
> distributions on xy plane.
>
> Kindly advice.
>
> Many Thanks
> Balaji

Darrell Hurt, Ph.D.
Section Head, Computational Biology
Bioinformatics and Computational Biosciences Branch (BCBB)
OCICB/OSMO/OD/NIAID/NIH

31 Center Drive, Room 3B62G
Bethesda, MD 20892
Office  301-402-0095
Mobile 301-758-3559
http://bioinformatics.niaid.nih.gov (Within NIH)
http://exon.niaid.nih.gov (Public)

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