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From: bharat gupta (bharat.85.monu_at_gmail.com)
Date: Sat Apr 17 2010 - 08:40:16 CDT
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Hi all
I have the following query regarding simulation using Desmond and pbc
tools in VMD
I kept my protein for simulation for 3ns duration but after 2ns
simulation it has started coming out of the simulation box and the
same thing happened with a friend of mine twice when he simulated his
protein for 3ns . In gromacs we can tackle the same problem by setting
the protein location to the centre of the box .. Can you tell me how
can I do this in using pbc tools in VMD.
It will be of great help if you respond to my query as soon as
possible as I have to submit my M.Sc. thesis on 26th April.
Details about my department :-
Centre For Bioinformatics
Pondicherry University
Puducherry -605014
Thanks
-- Bharat M.Sc. Bioinformatics (Final year) Centre for Bioinformatics Pondicherry University Puducherry India Mob. +919962670525
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