VMD-L Mailing List

From: Bylund, Tatsiana (NIH/NIAID) [F] (tatsiana.bylund_at_nih.gov)
Date: Tue Mar 01 2016 - 10:03:44 CST

Thank you so much!!!

On 3/1/16, 10:50 AM, "John Stone" <johns_at_ks.uiuc.edu> wrote:

>Hi,
> Use an atom selection, such as "not water" to show only the parts
>of your structure that you want to see.
>
>Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
>On Tue, Mar 01, 2016 at 03:34:34PM +0000, Bylund, Tatsiana (NIH/NIAID)
>[F] wrote:
>> Dear all,
>> I run simulations with explicit solvent. When I visualize them it's
>>hard
>> to see my molecule because of the solvent.
>> Can I get rid of the solvent in my dcd file or do something so that I
>> actually see the molecule?
>> Thank you very much!
>> Best regards,
>> Tatsiana
>
>--
>NIH Center for Macromolecular Modeling and Bioinformatics
>Beckman Institute for Advanced Science and Technology
>University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
>http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
>http://www.ks.uiuc.edu/Research/vmd/