VMD-L Mailing List

From: Abolfazl Musavi (ab.musavi1990_at_gmail.com)
Date: Thu Nov 08 2018 - 19:16:41 CST

Dear Josh

Thanks for the answer. It was a great help!!

Abolfazl

On Fri, 9 Nov 2018 at 04:25, Vermaas, Joshua <Joshua.Vermaas_at_nrel.gov>
wrote:

> Hi Abolfazl,
>
> Turn on logging (File->log to file/console), and play with changing
> colors, materials, and drawing methods. VMD will report the commands it
> used behind the scenes based on your input. The documentation itself is
> under the "mol" commands in the user guide.
> http://www.ks.uiuc.edu/Research/vmd/current/ug/node140.html
>
> -Josh
>
>
>
> On 2018-11-08 16:12:39-07:00 owner-vmd-l_at_ks.uiuc.edu wrote:
>
> Hello,
> I am going to, for example, *select *all the atoms with "name 2" which
> has "x<10", then change their *color*, *material*and *drawing method*.
> Unfortunately, I could not find out which commands *in TkConsole* (or
> TCL) could do that.
> I know the following line selects those atoms for me:
>
> % set sel [atomselect top "name 2 and x<10"]
>
> I want some commands like the one below which simply changes the radius of
> those atoms (to change color, material, etc):
>
> $sel set radius 2
>
>
> *Regards*
> *Abolfazl*
>
>