VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Nov 08 2018 - 21:47:29 CST

If your entire trajectory can be loaded into VMD at once, you
can load your trajectory, and then use the File | Save Coordinates menu item
to select the atoms of interest, and then write it all out to a new
file, whether PDB, DCD, or otherwise. This is essentially the same
way that one would do it with CatDCD, but all within VMD itself.
It is a more convenient way if your have enough RAM to load all of your
trajectory frames at once.

Best,
  John Stone
  vmd_at_ks.uiuc.edu

On Thu, Nov 08, 2018 at 10:40:32AM +0530, Abhik Ghosh Moulick wrote:
> Thanks John. Any alternate way?
>
> Regards
> Abhik Ghosh Moulick (JRF) 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/