VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Oct 14 2008 - 11:43:43 CDT
- Next message: Axel Kohlmeyer: "Re: Deleting frames / molecules does not free up memory!"
- Previous message: Lan Hua: "Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations?"
- In reply to: Lan Hua: "why atomselection "protein" can not choose all the protein atoms with different alternate locations?"
- Next in thread: Lan Hua: "Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations?"
- Reply: Lan Hua: "Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations?"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Hi,
If you want to see just the atoms that have alternate locations,
you can use a selection like one of these:
not altloc ""
protein and (not altloc "")
The 'altloc ""' refers to the atoms that do not have an alternate
conformation identifier set.
Cheers,
John Stone
vmd_at_ks.uiuc.edu
On Mon, Oct 13, 2008 at 02:49:07PM -0700, Lan Hua wrote:
[...]
> I want to locate all the protein atoms with alternate locations for
> protein with pdbid 3d1p. The pdb file for this protein downloaded from pdb
[...]
> locations are not chosen. Is there a good day to choose all the protein
> atoms with different alternate locations?
>
>
> Thank you very much
>
> Lan
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
- Next message: Axel Kohlmeyer: "Re: Deleting frames / molecules does not free up memory!"
- Previous message: Lan Hua: "Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations?"
- In reply to: Lan Hua: "why atomselection "protein" can not choose all the protein atoms with different alternate locations?"
- Next in thread: Lan Hua: "Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations?"
- Reply: Lan Hua: "Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations?"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]