VMD-L Mailing List

From: Leandro Barros da Silva (leandrobdasilva_at_ufsm.br)
Date: Wed Oct 05 2011 - 13:00:27 CDT

Hi users,

I'm interested in study a system with PBC using an hexagonal cell. I'm
trying to use VMD solvate script to add water molecules to the cell, but
this only generates (as far as I know) cubic/parallelepipidic cell. Any
hints on how to solvate (and generate the corresponding NAMD topoplogies)
cells with shapes other than cubic?

Best wishes and thanks in advance!

Leandro B da Silva