VMD-L Mailing List
From: hanif mahboobi (hanifmahboobi_at_yahoo.com)
Date: Fri Mar 11 2011 - 06:10:30 CST
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Dear VMD Developers
It seems that these 2 bugs are in VMD 1.9 beta3 (win32 version):
1) In membrane builder the charmm36 parametrization is not reachable:
ERROR: Unable to open topology file C:/Program Files/VMD/plugins/noarch/tcl/readcharmmtop1.0/top_all36_lipid.rtf
MOLECULE DESTROYED BY FATAL ERROR! Use resetpsf to start over.
ERROR: Unable to open topology file C:/Program Files/VMD/plugins/noarch/tcl/readcharmmtop1.0/top_all36_lipid.rtf
MOLECULE DESTROYED BY FATAL ERROR! Use resetpsf to start over.
while executing
"topology $topfile"
(procedure "membrane_core" line 78)
invoked from within
"membrane_core -l "$uselipid" -x "$xdim" -y "$ydim" -o "$prefix" -top "$useTop""
(in namespace inscope "::Membrane" script line 4)
invoked from within
"::namespace inscope ::Membrane {
puts "membrane_core -l $uselipid -x $xdim -y $ydim -o $prefix -top $useTop"
# membrane_core -l POPC -x..."
invoked from within
".membrane.gobutton invoke"
("uplevel" body line 1)
invoked from within
"uplevel #0 [list $w invoke]"
(procedure "tk::ButtonUp" line 24)
invoked from within
"tk::ButtonUp .membrane.gobutton"
(command bound to event)
2) In building graphene, all of the built structures are single layer regardless of specified layer counts.
Regards,
S H Mahboobi
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