VMD-L Mailing List

From: aneesh cna (aneeshcna_at_gmail.com)
Date: Fri Jan 25 2008 - 00:12:17 CST

Hello VMD users,
            I am try to use the Timeline plug in in the VMD for time
evaluation of secondary structure for a small stretch of residue ( 5-10 nos)
in my protein. But when i am selecting the ' calc.sec.stru ' option in
timeline plug in it showing errors as follows in the console even though it
runing.
last data name at 354
set frame to 351
now update for mol 0
updated
last data name at 355
set frame to 352
now update for mol 0
No hydrogen bonds found in /usr/tmp/file7el8ux
ERROR) Unable to find Stride output file: /usr/tmp/filejN2rPG
ERROR) Stride::read_stride_record: unable to read output file from Stride
ERROR) Call to Stride program failed.
updated
last data name at 356
set frame to 353
now update for mol 0
updated
last data name at 357
set frame to 354

    what could be the reason ?.

Thanks in Advance

Regards
Aneesh