VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Jan 31 2012 - 15:47:00 CST
- Next message: Axel Kohlmeyer: "Re: Rmsd script with arguments"
- Previous message: Mustafa Tekpinar: "Rmsd script with arguments"
- In reply to: thereal sisterdot: "NewRibbons/NewCartoon problem due to missing CUDA ?"
- Next in thread: thereal sisterdot: "Re: NewRibbons/NewCartoon problem due to missing CUDA ?"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Hi,
This has nothing to do with CUDA, as there's no CUDA code involved
in STRIDE secondary structure calculations, nor in the NewRibbons / NewCartoon
representations as implemented in VMD 1.9. I suspect a graphics driver
issue of some kind. As others have already said, we will need much more
information in order to help you track this down since it works fine for
other people.
Cheers,
John Stone
vmd_at_ks.uiuc.edu
On Mon, Jan 30, 2012 at 12:27:33PM +0100, thereal sisterdot wrote:
> Dear all,
>
> i am having trouble seeing structures with the styles NewRibbons
> NewCartoon, while Ribbons and Cartoon seem to work.
>
> e.g. for
> http://www.rcsb.org/pdb/files/3QBF.pdb.gz
>
> > mol new 3QBF.pdb
> > vmd_calculate_structure 0
> > [atomselect top "name CA"] get structure
> C E E C T T T T T E E E E E E T T E E E E E E E T T T T C C E E E C C C C
> C C C C C E E E E E E E E T T E E E E E E E E E E E E E E E E T T E E E E
> E E E E E T T T T T T T E E E C H H H H G G G C C E E E T T T B C T T T T
> T E E E E E E T T E E E E E E E T T T T C C C E E C C C C C C C C E E E E
> E E E E E T T E E E E E E E E E E E E E E E E T T T E E E E E E E E E T T
> T T T T E E E C H H H H H H H H C C E E E C
> > mol modstyle 0 0 cartoon
> (works okay)
> > mol modstyle 0 0 newcartoon
> (shows almost nothing- although some specks here and there seem visible)
>
> is it cause i am missing CUDA?
>
> thanks a lot
> Maria
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349 http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078
- Next message: Axel Kohlmeyer: "Re: Rmsd script with arguments"
- Previous message: Mustafa Tekpinar: "Rmsd script with arguments"
- In reply to: thereal sisterdot: "NewRibbons/NewCartoon problem due to missing CUDA ?"
- Next in thread: thereal sisterdot: "Re: NewRibbons/NewCartoon problem due to missing CUDA ?"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]