VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Sep 22 2004 - 12:36:51 CDT
- Next message: Luis Gracia: "Re: superimposing frames"
- Previous message: Amarda Shehu: "Re: superimposing frames"
- In reply to: Stern, Julie: "displaying neighboring residues"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Julie,
This is well documented in the VMD User's Guide.
The type of atom selection one uses for this is in the form of:
"same residue as within 4 of name FOO"
(where "FOO" is the name of your atom, you could also use "index xxx"
if you knew the atom index in question)
There's much more detail about 'within' and 'same' selections
in the VMD User's Guide here:
http://www.ks.uiuc.edu/Research/vmd/current/ug/node84.html
John Stone
vmd_at_ks.uiuc.edu
On Wed, Sep 22, 2004 at 12:54:26PM -0400, Stern, Julie wrote:
> Hi,
> I would like VMD to display all the residues within say 4 Angstroms
> of a particular atom, as a spherical neighborhood around an atom
> or residue. I can do this in SwissPDB. Can VMD
> do this and if so, what do you have to do? Thanks.
>
> Julie Stern
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
- Next message: Luis Gracia: "Re: superimposing frames"
- Previous message: Amarda Shehu: "Re: superimposing frames"
- In reply to: Stern, Julie: "displaying neighboring residues"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]