VMD-L Mailing List

From: Ricardo O. S. Soares (rsoares_at_fcfrp.usp.br)
Date: Thu Jan 09 2014 - 15:12:41 CST

Hello VMD users,

I have an externally generated potential map (dx file) and I'd like to assign its MSMS representation to solvent accessible surface, instead of the default Connolly surface, but I can't figure a way to do that.
(this is also cited here http://ibicluster.uchicago.edu/roll-documentation/apbs/tutorial/index.html#ftn.id442044).

I know one can calculate "measure sasa" and then draw the points, but I can't figure it out if its possible to assign these points the colors of the electrostatic potential.

Thanks,

Ricardo.

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Biological Chemistry and Physics
Faculty of Pharmaceutical Sciences at Ribeirão Preto
University of São Paulo - Brazil