VMD-L Mailing List

From: Elijah Roberts (erobert3_at_scs.uiuc.edu)
Date: Tue Aug 29 2006 - 10:45:09 CDT

That's interesting. Can you send me the entire console text after you
have tried to open MultiSeq? Also, how long does it take for the

couldn't open socket: connection timed out

message to appear and do you see one or several of them?

Elijah

l.spitzer_at_fr.fournierpharma.com wrote:
>
>
> Dear Elijah,
>
> Thank you very much for your answer...
> But I must have missed one step, because when I launch multiseq, I am never
> asked if I want to download the updates...it starts automatically!
> I am just asked to choose the directory in which I want to save metadata.
>
> (For information, I run VMD on windows system...)
>
> So is there a way I can either parametirize the connection to your site via
> the proxy?or to not download automatically the updates?
>
> Thanks in adavance,
>
> --------------------
> Luc SPITZER
> Computer Assisted Drug Design (IT)
> Laboratoires Fournier (Member of Solvay Group)
> 50, rue de Dijon
> F-21121 DAIX
> +333.80.44.75.00
> l.spitzer_at_fr.fournierpharma.com
>
>
>
> Elijah Roberts
> <erobert3_at_scs.uiu Pour : l.spitzer_at_fr.fournierpharma.com
> c.edu> cc : vmd-l_at_ks.uiuc.edu
> Envoyé par : Objet : Re: vmd-l: vmd-l : VMD1.8.5 : multiseq db
> owner-vmd-l_at_ks.ui
> uc.edu
>
>
> 29/08/2006 16:08
>
>
>
>
>
>
> Yes, when the dialog appears asking if you want to download the updates
> now, just click "No". You can also download them manually if you find
> that you need the data they contain: taxonomy and enzyme information
> about sequences and structures.
>
> Elijah
>
>
> l.spitzer_at_fr.fournierpharma.com wrote:
>
>> Dear All,
>>
>> I just installed the new version of VMD on my system (1.8.5) and tried to
>> use the multiseq alignment tool.
>>
>> But to my surprise, it tried to connect to a distant server :
>> MultiSeq Info) Trying to retrieve multiseq db version from:
>> http://www.scs.uiuc.edu/multiseq/versions.txt
>>
>> Due to proxy limitations, I cannot download those requested files :
>> MultiSeq Error) message: couldn't open socket: connection timed out
>>
>> Is there a way I can skip this step when launching multiseq, or use this
>> files located in a local directory on my system?
>>
>> Thank in advance for your answer,
>>
>> --------------------
>> Luc SPITZER
>> Computer Assisted Drug Design (IT)
>> Laboratoires Fournier (Member of Solvay Group)
>> 50, rue de Dijon
>> F-21121 DAIX
>> +333.80.44.75.00
>> l.spitzer_at_fr.fournierpharma.com
>>
>>
>>
>
>
>
>
>