VMD-L Mailing List

From: khannan krishna (khannan.krishna_at_gmail.com)
Date: Fri Sep 26 2014 - 06:14:22 CDT

Dear Axel,
               Thank you axel, I have used vesta visualization software
for that. I was not able to find the procedure of selecting atoms and
assign different color only to that atoms in vmd. Is it possible to do so ?

Khannan Krishna
Research scholar,
Department of Material science,
university of calicut.

On Fri, Sep 26, 2014 at 3:35 PM, khannan krishna <khannan.krishna_at_gmail.com>
wrote:

> Yes, Dynamicbonds option is not working.
>
> Khannan Krishna
> Research scholar,
> Department of Material science,
> university of calicut.
>
> On Fri, Sep 26, 2014 at 2:29 PM, Axel Kohlmeyer <akohlmey_at_gmail.com>
> wrote:
>
>> On Fri, Sep 26, 2014 at 1:48 AM, khannan krishna
>> <khannan.krishna_at_gmail.com> wrote:
>> > Dear all,
>> > I have no bonds and angles in xyz trajectories, since I used
>> many
>> > bond potential. Can we create bonds between atoms with in a cut-off
>> radius
>> > between atoms ?
>>
>> have you tried the DynamicBonds representation?
>>
>> >
>> >
>> > Khannan Krishna
>> > Research scholar,
>> > Department of Material science,
>> > university of calicut.
>>
>>
>>
>> --
>> Dr. Axel Kohlmeyer akohlmey_at_gmail.com http://goo.gl/1wk0
>> College of Science & Technology, Temple University, Philadelphia PA, USA
>> International Centre for Theoretical Physics, Trieste. Italy.
>>
>
>