VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Fri Sep 26 2014 - 06:46:27 CDT

On Fri, Sep 26, 2014 at 6:05 AM, khannan krishna
<khannan.krishna_at_gmail.com> wrote:
> Yes, Dynamicbonds option is not working.

it works fine for me. perhaps you need to re-read the documentation
and pay closer attention. also, this topic has been discussed many,
many times on this very mailing list. so searching the mailing list
archives may be helpful as well.

>
> Khannan Krishna
> Research scholar,
> Department of Material science,
> university of calicut.
>
> On Fri, Sep 26, 2014 at 2:29 PM, Axel Kohlmeyer <akohlmey_at_gmail.com> wrote:
>>
>> On Fri, Sep 26, 2014 at 1:48 AM, khannan krishna
>> <khannan.krishna_at_gmail.com> wrote:
>> > Dear all,
>> > I have no bonds and angles in xyz trajectories, since I used
>> > many
>> > bond potential. Can we create bonds between atoms with in a cut-off
>> > radius
>> > between atoms ?
>>
>> have you tried the DynamicBonds representation?
>>
>> >
>> >
>> > Khannan Krishna
>> > Research scholar,
>> > Department of Material science,
>> > university of calicut.
>>
>>
>>
>> --
>> Dr. Axel Kohlmeyer akohlmey_at_gmail.com http://goo.gl/1wk0
>> College of Science & Technology, Temple University, Philadelphia PA, USA
>> International Centre for Theoretical Physics, Trieste. Italy.
>
> 

-- 
Dr. Axel Kohlmeyer  akohlmey_at_gmail.com  http://goo.gl/1wk0
College of Science & Technology, Temple University, Philadelphia PA, USA
International Centre for Theoretical Physics, Trieste. Italy.