From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Fri Sep 26 2014 - 06:47:40 CDT

On Fri, Sep 26, 2014 at 7:14 AM, khannan krishna
<khannan.krishna_at_gmail.com> wrote:
> Dear Axel,
> Thank you axel, I have used vesta visualization software for
> that. I was not able to find the procedure of selecting atoms and assign
> different color only to that atoms in vmd. Is it possible to do so ?

i don't understand what you are asking here. VMD is extremely flexible
and powerful. however, it requires some thinking from the user and a
good read through (or two) of the user's guide and the available
tutorials. VMD cannot read your mind.

axel.

>
> Khannan Krishna
> Research scholar,
> Department of Material science,
> university of calicut.
>
> On Fri, Sep 26, 2014 at 3:35 PM, khannan krishna <khannan.krishna_at_gmail.com>
> wrote:
>>
>> Yes, Dynamicbonds option is not working.
>>
>> Khannan Krishna
>> Research scholar,
>> Department of Material science,
>> university of calicut.
>>
>> On Fri, Sep 26, 2014 at 2:29 PM, Axel Kohlmeyer <akohlmey_at_gmail.com>
>> wrote:
>>>
>>> On Fri, Sep 26, 2014 at 1:48 AM, khannan krishna
>>> <khannan.krishna_at_gmail.com> wrote:
>>> > Dear all,
>>> > I have no bonds and angles in xyz trajectories, since I used
>>> > many
>>> > bond potential. Can we create bonds between atoms with in a cut-off
>>> > radius
>>> > between atoms ?
>>>
>>> have you tried the DynamicBonds representation?
>>>
>>> >
>>> >
>>> > Khannan Krishna
>>> > Research scholar,
>>> > Department of Material science,
>>> > university of calicut.
>>>
>>>
>>>
>>> --
>>> Dr. Axel Kohlmeyer akohlmey_at_gmail.com http://goo.gl/1wk0
>>> College of Science & Technology, Temple University, Philadelphia PA, USA
>>> International Centre for Theoretical Physics, Trieste. Italy.
>>
>>
>

-- 
Dr. Axel Kohlmeyer  akohlmey_at_gmail.com  http://goo.gl/1wk0
College of Science & Technology, Temple University, Philadelphia PA, USA
International Centre for Theoretical Physics, Trieste. Italy.