VMD-L Mailing List

From: Yarrow Madrona (amadrona_at_uci.edu)
Date: Thu Mar 28 2013 - 19:36:48 CDT

Hi Mert,

I am having trouble making a new psf that matches the truncated dcd I
made. I would be happy to know how to trouble-shoot this. Thanks.

-Yarrow

> Are you able to load a single trajectory? If yes there is a solution.
> Best,
> Mert
> On Mar 28, 2013 5:24 PM, "Yarrow Madrona" <amadrona_at_uci.edu> wrote:
>
>> Hello,
>>
>> I have 17 long trajectories (50Gigs total). I really am only interested
>> in
>> what is happening to a heme cofactor and ligand. I would like to strip
>> everything else from the PSF and from the DCD.
>>
>> The reason for this is, I can't load this dcd onto my laptop and
>> creating
>> a summary-shorter dcd is not an option.
>>
>> My question is: How can I strip the dcd in the command line in VMD.
>>
>>
>> --
>> Yarrow Madrona
>>
>> Graduate Student
>> Molecular Biology and Biochemistry Dept.
>> University of California, Irvine
>> Natural Sciences I, Rm 2403
>> Irvine, CA 92697
>>
>>
>>
>>
> 

-- 
Yarrow Madrona
Graduate Student
Molecular Biology and Biochemistry Dept.
University of California, Irvine
Natural Sciences I, Rm 2403
Irvine, CA 92697