VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Nov 04 2009 - 09:49:17 CST
- Next message: sarah k: "Re: VMD autopsfgen and Mg2+"
- Previous message: sarah k: "rmsd calculation and plot"
- In reply to: Luis Agullo (LAB): "VMD autopsfgen and Mg2+"
- Next in thread: sarah k: "Re: VMD autopsfgen and Mg2+"
- Reply: sarah k: "Re: VMD autopsfgen and Mg2+"
- Maybe reply: Peter Freddolino: "Re: VMD autopsfgen and Mg2+"
- Maybe reply: Peter Freddolino: "Re: VMD autopsfgen and Mg2+"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Luis,
If you send me a copy of the structure that's giving you
trouble, we can have a look at it and see what might be happening here.
Cheers,
John Stone
vmd_at_ks.uiuc.edu
On Tue, Nov 03, 2009 at 11:17:59AM +0100, Luis Agullo (LAB) wrote:
> Hello,
>
> I have problems with the last version of VMD (VMD 1.8.7). When using
> autopsfgen with a file including Mg2+ (or Ca2+) cation is excluded from
> the output file. This does not take place with the previous of VMD version
> using the same files. I am using the new version for Windows, I have not
> been able to check this in Linux version.
>
> Cheers,
> Luis
>
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
- Next message: sarah k: "Re: VMD autopsfgen and Mg2+"
- Previous message: sarah k: "rmsd calculation and plot"
- In reply to: Luis Agullo (LAB): "VMD autopsfgen and Mg2+"
- Next in thread: sarah k: "Re: VMD autopsfgen and Mg2+"
- Reply: sarah k: "Re: VMD autopsfgen and Mg2+"
- Maybe reply: Peter Freddolino: "Re: VMD autopsfgen and Mg2+"
- Maybe reply: Peter Freddolino: "Re: VMD autopsfgen and Mg2+"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]