VMD-L Mailing List

From: Ashar Malik (asharjm_at_gmail.com)
Date: Tue Feb 19 2019 - 11:14:49 CST

Are there any necessary packages required? Have you imported them?

On Wed, Feb 20, 2019, 01:07 Montserrat Fabrega Ferrer <mffcri_at_ibmb.csic.es
wrote:

> Dear all,
>
> I am new using VMD and MDFF. I am trying to do a flexible fitting of an
> atomic structure into a cryo-EM low resolution volume following the
> tutorial, but I get already stuck running on the VDM console the mdff sim
> to obtain a simulate map out of the pdb.
> I use the following command:
>
> mdff sim $sel -res 5 -o map.situs
>
> And I got the following error:
>
> invalid command name "voltool"
>
> I would really much appreciate your help·
>
> Kind regards,
>
> Montserrat
>
> --
> Montserrat Fabrega Ferrer, PhD
>
> Miquel Coll lab - Structural biology of protein-nucleic acid complexes and
> molecular machines
> SBU-CSIC / IRB Barcelona
> c/ Baldiri Reixac, 10
> 08028 Barcelona, Spain
> mffcri_at_ibmb.csic.es / montserrat.fabrega_at_irbbarcelona.org
> Tel: +34 93 40 34957
>
>
>
>
>