From: Vlad Cojocaru (vlad.cojocaru_at_mpi-muenster.mpg.de)
Date: Thu May 16 2013 - 11:00:43 CDT

Dear all,

I tried as a test to build the CVS code of VMD (2013-05-16) also with
MPI support.
Details:
OS: openSUSE 12.3
Compiler: gcc 4.7.2
mpi: openmpi 1.5.5 and 1.6.4
cuda: 5.0.35

However, I get the error below ...
Anybody experience same issue ?

Best wishes
Vlad

P.S. Without MPI, no problem

VMDMPI.o: In function `MPI::Op::Init(void (*)(void const*, void*, int,
MPI::Datatype const&), bool)':
VMDMPI.C:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[_ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb]+0x19):
undefined reference to `ompi_mpi_cxx_op_intercept'
VMDMPI.o: In function `MPI::Intracomm::Create(MPI::Group const&) const':
VMDMPI.C:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x27):
undefined reference to `MPI::Comm::Comm()'
VMDMPI.o: In function `MPI::Intercomm::Merge(bool)':
VMDMPI.C:(.text._ZN3MPI9Intercomm5MergeEb[_ZN3MPI9Intercomm5MergeEb]+0x25):
undefined reference to `MPI::Comm::Comm()'
VMDMPI.o: In function `MPI::Intracomm::Split(int, int) const':
VMDMPI.C:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x26):
undefined reference to `MPI::Comm::Comm()'
VMDMPI.o: In function `MPI::Intracomm::Clone() const':
VMDMPI.C:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x2a):
undefined reference to `MPI::Comm::Comm()'
VMDMPI.o: In function `MPI::Cartcomm::Clone() const':
VMDMPI.C:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x25):
undefined reference to `MPI::Comm::Comm()'
VMDMPI.o:VMDMPI.C:(.text._ZN3MPI8Cartcomm3SubEPKb[_ZN3MPI8Cartcomm3SubEPKb]+0x7a):
more undefined references to `MPI::Comm::Comm()' follow
VMDMPI.o:(.rodata._ZTVN3MPI8DatatypeE[_ZTVN3MPI8DatatypeE]+0x78):
undefined reference to `MPI::Datatype::Free()'
VMDMPI.o:(.rodata._ZTVN3MPI3WinE[_ZTVN3MPI3WinE]+0x48): undefined
reference to `MPI::Win::Free()'
collect2: error: ld returned 1 exit status
make: *** [vmd_LINUXAMD64] Error 1

-- 
Dr. Vlad Cojocaru
Max Planck Institute for Molecular Biomedicine
Department of Cell and Developmental Biology
Röntgenstrasse 20, 48149 Münster, Germany
Tel: +49-251-70365-324; Fax: +49-251-70365-399
Email: vlad.cojocaru[at]mpi-muenster.mpg.de
http://www.mpi-muenster.mpg.de/research/teams/groups/rgcojocaru