VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Feb 07 2017 - 10:13:35 CST

Hi,
  What version of VMD are you using? The PSF plugin in recent versions
of VMD does support writing of angles/dihedrals/impropers, and even
cross-term maps. I would suggest that you try running VMD 1.9.3 and see
if that cures your problem, since it seems likely that you are using an
out-of-date version of VMD.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Tue, Feb 07, 2017 at 04:09:33PM +0330, Statics Eng wrote:
> Hi all
> I have a question about obtaining Topo file from a pdb file of Guess view
> software by VMD. I need atoms/bonds/angles/dihedrals but I only can obtain
> atoms and bonds from "animate write psf CNT.psf" command in VMD.
> Indeed I should function a CNT by Amin group and I do this in Guess view
> software. Then I need Topo file and I want to obtain it from VMD but I only
> can obtain atoms and bonds.
> Please help me.
> Thanks 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/