VMD-L Mailing List

From: Ajasja Ljubetič (ajasja.ljubetic_at_gmail.com)
Date: Wed Aug 11 2010 - 03:48:44 CDT

Try to export the psf file as well (if this is possible with material
studio).
VMD uses some heuristics to determine bonds when lodig the pdb alone, which
may not be what you want.

Best regards,
Ajasja

On Wed, Aug 11, 2010 at 08:49, candy deck <candy76_at_hotmail.co.uk> wrote:

> Hello,
>
> I'm working on adsorption of dioxins into zeollite.
> All the structures are built with Material studio and then exported (.pdb)
> to be visualized with VMD.
> However, the structure is different. Some bonds are missing and the nature
> of some atoms is different.
> Can you help ???
>
> Thanks
>
> Candy
>